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International Publications by Ph.D. Bioscience Students

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2025

Tesena, P., Vinijkumthorn, R., Kingkaw, A., Yanyongsirikarn, P., Phasuk, K., Ploypetch, S., Phaonakrop, N., Roytrakul, S., Vongsangnak, W., Prapaiwan, N. (2025).

Probing Wnt pathway and functional signal in equine melanocytic neoplasms through quantitative proteomics and immunohistochemistry.

BMC Veterinary Research, 21(1).
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Quainoo, DK., Chalermwong, P., Muangsuk, P., Nguyen, THD., Panthum, T., Singchat, W., Budi, T., Duengkae, P., Suksavate, W., Chaiyes, A. (2025).

Genetic insights for enhancing conservation strategies in captive and wild Asian elephants through improved non-invasive DNA-based individual identification.

PLOS ONE, 20(45782).
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Wang, H., Sakda, P., Chen, L., Xie, J., Yu, J., Liu, B., Vongsangnak, W., Wang, R. (2025).

Characterizing metabolites and biotransformation in lactic acid bacteria fermented Millennium cherry tomato juice using integrated analytical tools.

Food Chemistry, 492.
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Rey, J., Singchat, W., Jaito, W., Punthum, T., Lisachov, AP., Pongsanarm, T., Thatukan, C., Wongloet, W., Budi, T., Chalermwong, P., et al. (2025).

Near-stop in spermatogonia progression and reduced sperm motility in two testis forms of captive North African catfish in Kalasin, Thailand.

Aquaculture, 595.
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Pongsanarm, T., Panthum, T., Budi, T., Wongloet, W., Chaiyes, A., Thatukan, C., Jaito, W., Patta, C., Singchat, W., Duengkae, P. (2025).

Genetic and geographical insights call for early conservation of Mae Hong Son’s blue mahseer to prevent population crisis.

PLOS ONE, 20(45690).
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Kingkaw, A., Patumcharoenpol, P., Suratannon, N., Nakphaichit, M., Roytrakul, S., Vongsangnak, W. (2025).

Exploring the functional diversity and metabolic activities of the human gut microbiome in Thai adults in response to a prebiotic diet.

Microbiology Spectrum, 13(2).
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He, Y., Mok, K., Chumnanpuen, P., Nakphaichit, M., Vongsangnak, W. (2025).

Dissecting Metabolic Functions and Sugar Transporters Using Genome and Transportome of Probiotic Limosilactobacillus fermentum KUB-D18.

Genes, 16(3).
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Rey, J., Nguyen, THD., Singchat, W., Punthum, T., Kraichak, E., Panochit, P., Maneeaphai, W., Phuonnim, A., Sengtrakool, S., Sriphairoj, K. (2025).

Impact of higher temperatures on yolk sac absorption and early development in hybrid catfish between Clarias gariepinus and C. macrocephalus.

Journal of the World Aquaculture Society, 56(1).
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Luu, A., Budi, T., Singchat, W., Nguyen, CPT., Panthum, T., Tanglertpaibul, N., Thong, T., Vangnai, K., Chaiyes, A., Yokthongwattana, C., et al. (2025).

Comparison of unique Dong Tao chickens from Vietnam and Thailand: genetic background and differences for resource management.

Genes and Genomics, 47(6), 727-739.
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Liu, B., Tomtong, P., Charoensiddhi, S., Vongsangnak, W. (2025).

Exploring Morchella esculenta polysaccharide extracts: In vitro digestion, fermentation characteristics, and prebiotic potential for modulating gut microbiota and function.

International Journal of Biological Macromolecules, 318.
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Wattanavanitchakorn, S., Wansuksri, R., Kamonsutthipaijit, N., Ranathunga, A., Kamolsukyeunyong, W., Suwannaporn, P. (2025).

Effect of granular and molecular structure of starch on physicochemical properties and digestibility of dough- and mature-stage rice.

Food Chemistry: X, 29.
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Sakda, P., Wang, H., Li, J., Zheng, J., He, Y., Vongsangnak, W., Wang, R. (2025).

Enhancing functional properties and analysis of sugar and metabolite composition of Hylocereus megalanthus juice through Bifidobacterium fermentation.

Food Chemistry: X, 30.
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Patta, C., Sriphairoj, K., Budi, T., Quanoo, DK., Nguyen, THD., Jaito, W., Chalermwong, P., Pongsanarm, T., Thatukan, C., Wongloet, W., et al. (2025).

Genetic Structural Changes While Maintaining Effective Population Size of Bighead Catfish in Nong Han Lake: Implications of Metapopulation Dynamics or Release Activities.

Fisheries Management and Ecology, 32(4), 11-25.
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2024

Budi, T., Kumnan, N., Singchat, W., Chalermwong, P., Thong, T., Wongloet, W., Faniriharisoa Maxime Toky, R., Pathomvanich, P., Panthum, T., Wattanadilokchatkun, P., et al. (2024).

Weak purifying selection in allelic diversity of the ADSL gene in indigenous and local chicken breeds and red junglefowl in Thailand.

Gene, 923.
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Jaito, W., Sonongbua, J., Panthum, T., Wattanadilokcahtkun, P., Ariyaraphong, N., Thong, T., Singchat, W., Ahmad, SF., Kraichak, E., Muangmai, N., et al. (2024).

Disclosing the hidden nucleotide sequences: a journey into DNA barcoding of raptor species in public repositories.

Genes and Genomics, 46(1), 95-112.
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Budi, T., Ninwat, S., Sakornwimon, W., Thongcham, K., Phakphien, R., Kalaya, C., Phavaphutanon, J. (2024).

Genetic diversity and connectivity of the Irrawaddy dolphin in Southern Thailand: Emphasizing the last fourteen of the Songkhla dolphin status from a microsatellite perspective.

Biodiversitas, 25(4), 1729-1735.
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Kittichotirat, W., Patumcharoenpol, P., Rujirawat, T., Tangphatsornruang, S., Yurayart, C., Krajaejun, T. (2024).

Pins Gene Table v2.0: An Online Genome Database of 37 Pythium insidiosum Strains for Gene Content Exploration and Phylogenomic Analysis.

Journal of Fungi, 10(2).
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Budi, T., Singchat, W., Tanglertpaibul, N., Thong, T., Panthum, T., Noito, K., Wattanadilokchatkun, P., Jehangir, M., Chaiyes, A., Wongloet, W., et al. (2024).

Research Note: Possible influence of thermal selection on patterns of HSP70 and HSP90 gene polymorphisms in Thai indigenous and local chicken breeds and red junglefowls.

Poultry Science, 103(4).
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Budi, T., Klinsawat, W., Phavaphutanon, J., Piyapattanakorn, S., Kreb, D., Yuda, P. (2024).

Genetic analysis evidence of population substructure within the endangered Irrawaddydolphin (OrcaellabrevirostrisGray,1866) in Thailand and Indonesia.

Agriculture and Natural Resources, 58(3), 331-338.
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Sonongbua, J., Thong, T., Panthum, T., Budi, T., Singchat, W., Kraichak, E., Chaiyes, A., Muangmai, N., Duengkae, P., Sitdhibutr, R. (2024).

Insights into Mitochondrial Rearrangements and Selection in Accipitrid Mitogenomes, with New Data on Haliastur indus and Accipiter badius poliopsis.

Genes, 15(11).
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Budi, T., Luu, A., Singchat, W., Wongloet, W., Rey, J., Kumnan, N., Chalermwong, P., Nguyen, CPT., Panthum, T., Tanglertpaibul, N., et al. (2024).

Purposive breeding strategies drive genetic differentiation in Thai fighting cock breeds.

Genes and Genomics, 46(10), 1225-1237.
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Buradam, P., Thananusak, R., Koffas, MA., Chumnanpuen, P., Vongsangnak, W. (2024).

Expanded Gene Regulatory Network Reveals Potential Light-Responsive Transcription Factors and Target Genes in Cordyceps militaris.

International Journal of Molecular Sciences, 25(19).
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Jaito, W., Singchat, W., Patta, C., Thatukan, C., Kumnan, N., Chalermwong, P., Budi, T., Panthum, T., Wongloet, W., Wattanadilokchatkun, P. (2024).

Shared alleles and genetic structures in different Thai domestic cat breeds: the possible influence of common racial origins.

Genomics and Informatics, 22(1).
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Tanglertpaibul, N., Budi, T., Nguyen, CPT., Singchat, W., Wongloet, W., Kumnan, N., Chalermwong, P., Luu, A., Noito, K., Panthum, T., et al. (2024).

Samae Dam chicken: a variety of the Pradu Hang Dam breed revealed from microsatellite genotyping data.

Animal Bioscience, 37(12), 2033-2043.
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Chantanaskul, T., Patumcharoenpol, P., Roytrakul, S., Kingkaw, A., Vongsangnak, W. (2024).

Exploring Protein Functions of Gut Bacteriome and Mycobiome in Thai Infants Associated with Atopic Dermatitis Through Metaproteomic and Host Interaction Analysis.

International Journal of Molecular Sciences, 25(24).
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Vinijkumthorn, R., Kingkaw, A., Yanyongsirikarn, P., Phaonakrop, N., Roytrakul, S., Vongsangnak, W., Tesena, P. (2024).

Phosphorylation of SNW1 protein associated with equine melanocytic neoplasm identified in serum and feces.

Scientific Reports, 14(1).
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2023

Promsuk, G., Chuawong, P., Songjanthuek, P., Thaisri, S., Yongsmith, B., Wattana-Amorn, P. (2023).

Absolute configuration of azaphilones from Monascus kaoliang KB9 and solvent effects on their keto and enol forms.

Natural Product Research, 37(13), 2181-2188.
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Srikulnath, K., Ariyaraphong, N., Singchat, W., Panthum, T., Lisachov, AP., Ahmad, SF., Han, K., Muangmai, N., Duengkae, P. (2023).

Asian Elephant Evolutionary Relationships: New Perspectives from Mitochondrial D-Loop Haplotype Diversity.

Sustainability (Switzerland), 15(1).
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Kingkaw, A., Raethong, N., Patumcharoenpol, P., Suratannon, N., Nakphaichit, M., Keawsompong, S., Roytrakul, S., Vongsangnak, W. (2023).

Analyzing Predominant Bacterial Species and Potential Short-Chain Fatty Acid-Associated Metabolic Routes in Human Gut Microbiome Using Integrative Metagenomics.

Biology, 12(1).
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Panthum, T., Ariyaphong, N., Wattanadilokchatkun, P., Singchat, W., Ahmad, SF., Kraichak, E., Dokkaew, S., Muangmai, N., Han, K., Duengkae, P. (2023).

Quality control of fighting fish nucleotide sequences in public repositories reveals a dark matter of systematic taxonomic implication.

Genes and Genomics, 45(2), 169-181.
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Kongsompong, S., E-Kobon, T., Taengphan, W., Sangkhawasi, M., Khongkow, M., Chumnanpuen, P. (2023).

Computer-Aided Virtual Screening and In Vitro Validation of Biomimetic Tyrosinase Inhibitory Peptides from Abalone Peptidome.

International Journal of Molecular Sciences, 24(4).
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Wongloet, W., Kongthong, P., Chaiyes, A., Singchat, W., Suksavate, W., Ariyaraphong, N., Panthum, T., Lisachov, AP., Jaisamut, K., Sonongbua, J., et al. (2023).

Genetic Monitoring of the Last Captive Population of Greater Mouse-Deer on the Thai Mainland and Prediction of Habitat Suitability before Reintroduction.

Sustainability (Switzerland), 15(4).
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Kittichotirat, W., Rujirawat, T., Patumcharoenpol, P., Krajaejun, T. (2023).

Comparative Genomic Analysis Reveals Gene Content Diversity, Phylogenomic Contour, Putative Virulence Determinants, and Potential Diagnostic Markers within Pythium insidiosum Traits.

Journal of Fungi, 9(2).
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Budi, T., Singchat, W., Tanglertpaibul, N., Wongloet, W., Chaiyes, A., Ariyaraphong, N., Thienpreecha, W., Wannakan, W., Mungmee, A., Thong, T., et al. (2023).

Thai Local Chicken Breeds, Chee Fah and Fah Luang, Originated from Chinese Black-Boned Chicken with Introgression of Red Junglefowl and Domestic Chicken Breeds.

Sustainability (Switzerland), 15(8).
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Prabhakaran, P., Raethong, N., Thananusak, R., Nazir, MYM., Sapkaew, C., Soommat, P., Kingkaw, A., Abdul Hamid, AA., Vongsangnak, W., Song, Y. (2023).

Revealing holistic metabolic responses associated with lipid and docosahexaenoic acid (DHA) production in Aurantiochytrium sp. SW1.

Biochimica et Biophysica Acta – Molecular and Cell Biology of Lipids, 1868(5).
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Liu, X., Zhang, H., Zhou, Z., Prabhakaran, P., Vongsangnak, W., Hu, G., Xiao, F. (2023).

Functional insight into Cordyceps militaris sugar transporters by structure modeling, network analysis and allosteric regulation.

Physical Chemistry Chemical Physics, 25(20), 14311-14323.
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Thananusak, R., Laoteng, K., Raethong, N., Koffas, MA., Vongsangnak, W. (2023).

Dissecting Metabolic Regulation in Mycelial Growth and Fruiting Body Developmental Stages of Cordyceps militaris through Integrative Transcriptome Analysis.

Biotechnology and Bioprocess Engineering, 28(3), 406-418.
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Panthum, T., Wattanadilokchatkun, P., Jaisamut, K., Singchat, W., Ahmad, SF., Muangmai, N., Duengkae, P., Antunes, A., Srikulnath, K. (2023).

In Silico Chromosome Mapping of the Male-Specific/Linked Loci in the Jade Perch (Scortum barcoo) Suggests Chromosome 19 as the Putative Y Sex Chromosome.

Fishes, 8(10).
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Raethong, N., Thananusak, R., Cheawchanlertfa, P., Prabhakaran, P., Rattanaporn, K., Laoteng, K., Koffas, MA., Vongsangnak, W. (2023).

Functional genomics and systems biology of Cordyceps species for biotechnological applications.

Current Opinion in Biotechnology, 81.
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Krajaejun, T., Patumcharoenpol, P., Rujirawat, T., Kittichotirat, W., Tangphatsornruang, S., Lohnoo, T., Yingyong, W. (2023).

PacBio long read-assembled draft genome of Pythium insidiosum strain Pi-S isolated from a Thai patient with pythiosis.

BMC Research Notes, 16(1).
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Charoenkwan, P., Kongsompong, S., Schaduangrat, N., Chumnanpuen, P., Shoombuatong, W. (2023).

TIPred: a novel stacked ensemble approach for the accelerated discovery of tyrosinase inhibitory peptides.

BMC Bioinformatics, 24(1).
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Krajaejun, T., Patumcharoenpol, P., Rujirawat, T., Kittichotirat, W., Tangphatsornruang, S. (2023).

MGI short-read genome assemblies of Pythium insidiosum (reclassified as Pythium periculosum) strains Pi057C3 and Pi050C3.

BMC Research Notes, 16(1).
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Wattanadilokcahtkun, P., Chalermwong, P., Singchat, W., Wongloet, W., Chaiyes, A., Tanglertpaibul, N., Budi, T., Panthum, T., Ariyaraphong, N., Ahmad, SF., et al. (2023).

Genetic admixture and diversity in Thai domestic chickens revealed through analysis of Lao Pa Koi fighting cocks.

PLOS ONE, 18(45940).
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Patumcharoenpol, P., Kingkaw, A., Nakphaichit, M., Chatchatee, P., Suratannon, N., Panagiotou, G., Vongsangnak, W. (2023).

Exploring Longitudinal Gut Microbiome towards Metabolic Functional Changes Associated in Atopic Dermatitis in Early Childhood.

Biology, 12(9).
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Areerat, S., Chundang, P., Lekcharoensuk, C., Patumcharoenpol, P., Kovitvadhi, A. (2023).

Insect-based diets (house crickets and mulberry silkworm pupae): A comparison of their effects on canine gut microbiota.

Veterinary World, 16(8), 1627-1635.
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2022

In-On, A., Thananusak, R., Ruengjitchatchawalya, M., Vongsangnak, W., Laomettachit, T. (2022).

Construction of Light-Responsive Gene Regulatory Network for Growth, Development and Secondary Metabolite Production in Cordyceps militaris.

Biology, 11(1).
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Dudhat, J., Sakpuntoon, V., Angchuan, J., Kaewwichian, R., Srisuk, N. (2022).

Magnusiomyces siamensis sp. nov., a yeast-like fungus isolated from food waste.

International Journal of Systematic and Evolutionary Microbiology, 72(6).
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Namrak, T., Raethong, N., Jatuponwiphat, T., Nitisinprasert, S., Vongsangnak, W., Nakphaichit, M. (2022).

Probing Genome-Scale Model Reveals Metabolic Capability and Essential Nutrients for Growth of Probiotic Limosilactobacillus reuteri KUB-AC5.

Biology, 11(2).
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Srikulnath, K., Ahmad, SF., Singchat, W., Panthum, T. (2022).

Do Ty3/Gypsy Transposable Elements Play Preferential Roles in Sex Chromosome Differentiation?.

Life, 12(4).
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Krajaejun, T., Rujirawat, T., Lohnoo, T., Yingyong, W., Sae-Chew, P., Reamtong, O., Kittichotirat, W., Patumcharoenpol, P. (2022).

Secretome Profiling by Proteogenomic Analysis Shows Species-Specific, Temperature-Dependent, and Putative Virulence Proteins of Pythium insidiosum.

Journal of Fungi, 8(5).
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Panthum, T., Jaisamut, K., Singchat, W., Ahmad, SF., Kongkaew, L., Wongloet, W., Dokkaew, S., Kraichak, E., Muangmai, N., Duengkae, P. (2022).

Something Fishy about Siamese Fighting Fish (Betta splendens) Sex: Polygenic Sex Determination or a Newly Emerged Sex-Determining Region?.

Cells, 11(11).
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Singchat, W., Chaiyes, A., Wongloet, W., Ariyaraphong, N., Jaisamut, K., Panthum, T., Ahmad, SF., Chaleekarn, W., Suksavate, W., Inpota, M. (2022).

Red Junglefowl Resource Management Guide: Bioresource Reintroduction for Sustainable Food Security in Thailand.

Sustainability (Switzerland), 14(13).
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Awofiranye, AE., Hudson, J., Tithi, AD., Linhardt, RJ., Vongsangnak, W., Koffas, MA. (2022).

Chondroitin Sulfate and Its Derivatives: A Review of Microbial and Other Production Methods.

Fermentation, 8(7).
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Duengkae, P., Ariyaraphong, N., Tipkantha, W., Jairak, W., Baicharoen, S., Ho My Nguyen, D., Korboon, O., Singchat, W., Panthum, T., Ahmad, SF., et al. (2022).

Coincidence of low genetic diversity and increasing population size in wild gaur populations in the Khao Phaeng Ma Non- Hunting Area, Thailand: A challenge for conservation management under humanwildlife conflict.

PLOS ONE, 17(45877).
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Chaiyes, A., Ariyaraphong, N., Sukgosa, N., Jangtarwan, K., Ahmad, SF., Laopichienpong, N., Singchat, W., Panthum, T., Duangjai, S., Muangmai, N. (2022).

Evidence of Genetic Connectivity among Lyle’s Flying Fox Populations in Thailand for Wildlife Management and One Health Framework.

Sustainability (Switzerland), 14(17).
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Phujumpa, P., Muangham, S., Jatuponwiphat, T., Koffas, MA., Nakphaichit, M., Vongsangnak, W. (2022).

Comparative genomics-based probiotic relevance of Limosilactobacillus fermentum KUB-D18.

Gene, 840.
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Bunyoo, C., Roongsattham, P., Khumwan, S., Phonmakham, J., Wonnapinij, P., Thamchaipenet, A. (2022).

Dynamic Alteration of Microbial Communities of Duckweeds from Nature to Nutrient-Deficient Condition.

Plants, 11(21).
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Narsing Rao, MP., Lohmaneeratana, K., Bunyoo, C., Thamchaipenet, A. (2022).

Actinobacteria–Plant Interactions in Alleviating Abiotic Stress.

Plants, 11(21).
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Ariyaraphong, N., Ho My Nguyen, D., Singchat, W., Suksavate, W., Panthum, T., Langkaphin, W., Chansitthiwet, S., Angkawanish, T., Promking, A., Kaewtip, K. (2022).

Standard Identification Certificate for Legal Legislation of a Unique Gene Pool of Thai Domestic Elephants Originating from a Male Elephant Contribution to Breeding.

Sustainability (Switzerland), 14(22).
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Hanchanachai, N., Chumnanpuen, P., E-Kobon, T. (2022).

Effect of conditioned media from Aeromonas caviae on the transcriptomic changes of the porcine isolates of Pasteurella multocida.

BMC Microbiology, 22(1).
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Promsuk, G., Vuttipongchaikij, S., Prommarit, K., Suttangkakul, A., Lazarus, CM., Wonnapinij, P., Wattana-Amorn, P. (2022).

Anthranilic Acid Accumulation in Saccharomyces cerevisiae Induced by Expression of a Nonribosomal Peptide Synthetase Gene from Paecilomyces cinnamomeus BCC 9616.

ChemBioChem, 23(24).
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Wattanadilokchatkun, P., Panthum, T., Jaisamut, K., Ahmad, SF., Dokkaew, S., Muangmai, N., Duengkae, P., Singchat, W., Srikulnath, K. (2022).

Characterization of Microsatellite Distribution in Siamese Fighting Fish Genome to Promote Conservation and Genetic Diversity.

Fishes, 7(5).
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2021

Tesena, P., Kingkaw, A., Vongsangnak, W., Pitikarn, S., Phaonakrop, N., Roytrakul, S., Kovitvadhi, A. (2021).

Preliminary study: Proteomic profiling uncovers potential proteins for biomonitoring equine melanocytic neoplasm.

Animals, 11(7).
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Ratanabunyong, S., Aeksiri, N., Yanaka, S., Yagi-Utsumi, M., Kato, K., Choowongkomon, K., Hannongbua, S. (2021).

Characterization of New DNA Aptamers for Anti-HIV-1 Reverse Transcriptase.

ChemBioChem, 22(5), 915-923.
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Choengpanya, K., Ratanabunyong, S., Seetaha, S., Tabtimmai, L., Choowongkomon, K. (2021).

Anti-HIV-1 reverse transcriptase property of some edible mushrooms in Asia.

Saudi Journal of Biological Sciences, 28(5), 2807-2815.
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Kongsompong, S., E-Kobon, T., Chumnanpuen, P. (2021).

K-Nearest Neighbor and Random Forest-Based Prediction of Putative Tyrosinase Inhibitory Peptides of Abalone Haliotis diversicolor.

Molecules, 26(12).
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Krajaejun, T., Kittichotirat, W., Patumcharoenpol, P., Rujirawat, T., Lohnoo, T., Yingyong, W. (2021).

Genome data of four Pythium insidiosum strains from the phylogenetically-distinct clades I, II, and III.

BMC Research Notes, 14(1).
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Sathitkowitchai, W., Suratannon, N., Keawsompong, S., Weerapakorn, W., Patumcharoenpol, P., Nitisinprasert, S., Nakphaichit, M. (2021).

A randomized trial to evaluate the impact of copra meal hydrolysate on gastrointestinal symptoms and gut microbiome.

PeerJ, 9.
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Jatuponwiphat, T., Namrak, T., Nitisinprasert, S., Nakphaichit, M., Vongsangnak, W. (2021).

Integrative growth physiology and transcriptome profiling of probiotic Limosilactobacillus reuteri kub-ac5.

PeerJ, 9.
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Hanchanachai, N., Chumnanpuen, P., E-Kobon, T. (2021).

Interaction study of Pasteurella multocida with culturable aerobic bacteria isolated from porcine respiratory tracts using coculture in conditioned media.

BMC Microbiology, 21(1).
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Patumcharoenpol, P., Nakphaichit, M., Panagiotou, G., Senavonge, A., Suratannon, N., Vongsangnak, W. (2021).

MetGEMs Toolbox: Metagenome-scale models as integrative toolbox for uncovering metabolic functions and routes of human gut microbiome.

PLOS Computational Biology, 17(45992).
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